 
Rendering Motion Projects for Use in Final Cut Pro
If necessary, you can export a Motion project to a QuickTime movie and import it into 
Final Cut Pro. This method is less flexible than importing Motion projects directly into 
Final Cut Pro, so you should usually avoid this option. When you export the Motion 
project, choose the Animation codec for lossless compression and to include an 8-bit 
alpha channel. The alpha channel makes it easy to composite the QuickTime movie 
with your footage in Final Cut Pro.